References
1. Krkošek M, Revie CW, Gargan PG, Skilbrei OT, Finstad B, Todd CD (2013) Impact of parasites on salmon recruitment in the Northeast Atlantic Ocean. Proc Roy Soc B 280:20122359.
2. Krkošek M, Connors BM, Morton A, Lewis MA, Dill LM, Hilborn R (2011) Effects of parasites from salmon farms on productivity of wild salmon. Proc Natl Acad Sci 108:14700–14704.
3. Peacock SJ, Krkošek M, Proboszcz S, Orr C, Lewis MA (2013) Cessation of a salmon decline with control of parasites. Ecol Appl 23:606–620.
4. Miller KM, et al. (2014) Infectious disease, shifting climates, and opportunistic predators: cumulative factors potentially impacting wild salmon declines. Evol Appl 7:812--‐855
5. Groot C, Margolis L (1991) Pacific Salmon Life Histories (UBC press, Vancouver, B.C.).
6. Parker RR (1968) Marine mortality schedules of pink salmon of the Bella Coola River, central British Columbia. J Fish Res Board Canada 25:757–794.
7. Sackville M, Tang S, Nendick L, Farrell AP, Brauner CJ (2011) Pink salmon (Oncorhynchus gorbuscha) osmoregulatory development plays a key role in sea louse (Lepeophtheirus salmonis) tolerance. Can J Fish Aquat Sci 68:1087–1096.
8. Brauner CJ, Sackville M, Gallagher Z, Tang S, Nendick L, Farrell AP (2012) Physiological consequences of the salmon louse (Lepeophtheirus salmonis) on juvenile pink salmon (Oncorhynchus gorbuscha): implications for wild salmon ecology and management, and for salmon aquaculture. Philos Trans Roy Soc Lond B Biol Sci 367:1770–9.
9. Krkošek M, et al. (2011) Fish farms, parasites, and predators: implications for salmon population dynamics. Ecol Appl 21:897–914.
10. Nendick L, Sackville M, Tang S, Brauner CJ, Farrell AP (2011) Sea lice infection of juvenile pink salmon (Oncorhynchus gorbuscha): effects on swimming performance and postexercise ion balance. Can J Fish Aquat Sci 68:241–249.
11. Mesa MG, Poe TP, Maule AG, Schreck CB (1998) Vulnerability to predation and physiological stress responses in juvenile chinook salmon (Oncorhynchus tshawytscha) experimentally infected with Renibacterium salmoninarum. Can J Fish Aquat Sci 55:1599–1606.
12. Sandell TA., Teel DJ, Fisher J, Beckman B, Jacobson KC (2014) Infections by Renibacterium salmoninarum and Nanophyetus salmincola Chapin are associated with reduced growth of juvenile chinook salmon, Oncorhynchus tshawytscha (Walbaum), in the northeast Pacific Ocean. J Fish Dis 38:365–378.
13. Beamish RJ, Mahnken C (2001) A critical size and period hypothesis to explain natural regulation of salmon abundance and the linkage to climate and climate change. Prog Oceanogr 49:423–437.
14. Duffy EJ, Beauchamp DA (2011) Rapid growth in the early marine period improves the marine survival of Chinook salmon (Oncorhynchus tshawytscha) in Puget Sound, Washington. Can J Fish Aquat Sci 68:232–240.
15. Godwin SC, Dill LM, Reynolds JD, Krkošek M (2015) Sea lice, sockeye salmon, and foraging competition: lousy fish are lousy competitors. Can J Fish Aquat Sci. (in press)
16. Connors BM, Braun DC, Peterman RMM, Cooper AB, Reynolds JD, Dill LM, Ruggerone GT, Krkošek M (2012) Migration links ocean--‐scale competition and local ocean conditions with exposure to farmed salmon to shape wild salmon dynamics. Conserv Lett 0:1–9.
17. Korman J (2011) Summary of Information for Evaluating Impacts of Salmon Farms on Survival of Fraser River Sockeye Salmon. Cohen Comm (Technical Report 5A):57 p.
18. St--‐Hilaire S, Ribble C, Traxler G, Davies T, Kent ML (2001) Evidence for a carrier state of infectious hematopoietic necrosis virus in chinook salmon Oncorhynchus tshawytscha. Dis Aquat Organ 46:173–179.
19. Lafferty KD, Gerber LR (2002) Good medicine for conservation biology: The intersection of epidemiology and conservation theory. Conserv Biol 16:593–604.
20. Ruggerone GT, Connors BM (2015) Productivity and life history of sockeye salmon in relation to competition with pink and sockeye salmon in the North Pacific Ocean. Can J Fish Aquat Sci: DOI 10.1139/cjfas--‐2014--‐0134
21. Cohen BI (2012) The Uncertain Future of Fraser River Sockeye. Volume 3: Recommendations --‐ Summary --‐ Process.
22. Husa V, Kutti T, Ervik A, Sjotun K, Hansen PK, Aure J (2013) Regional impact from fin--‐ fish farming in an intensive production area (Hardangerfjord, Norway). Mar Biol Res 10: 241–252.
23. Torrissen O, Jones S, Asche F, Guttormsen A., Skilbrei OT, Nilsen F, Horsberg TE, Jackson D (2013) Salmon lice --‐ impact on wild salmonids and salmon aquaculture. J Fish Dis 36:171–194.
24. Johnson SC (1993) A comparison of the development and growth rates of Lepeophtheirus salmonis (Copepoda: Caligidae) on Atlantic (Salmo salar) and chinook (Oncorhynchus tshawytscha) salmon. Pathogens of Wild and Farmed Fish: Sea Lice, eds Boxshall GA, DeFaye D, pp 68–80.
25. Johnson SC, Albright LJ (1992) Comparative susceptibility and histopathology of the host response of naive Atlantic, chinook, and coho salmon to experimental infection with Lepeophtheirus salmonis (Copepoda: Caligidae). Dis Aquat Organ 14:179–193.
26. Sutherland BJG, Koczka KW, Yasuike M, Jantzen SG, Yazawa R, Koop BF, Jones SRM (2014) Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis. BMC Genomics 15 DOI: 10.1186/1471--‐2164--‐15--‐200
27. Traxler G, Ftoome J, Kent M (1993) Transmission of infectious hematopoietic necrosis virus in seawater. Dis Aquat Organ 16:111–114.
28. Johnson SC, Garver KA, Bradshaw J, Marty GD, Snyman HN, Richard J, Morrison DB Infection with piscine reovirus (PRV) fails to cause heart and skeletal muscle inflammation (HSMI) in Atlantic and sockeye salmon. In prep.
29. Krkošek M, Hilborn R (2011) Sea lice (Lepeophtheirus salmonis) infestations and the productivity of pink salmon (Oncorhynchus gorbuscha) in the Broughton Archipelago, British Columbia, Canada. Can J Fish Aquat Sci 68:17–29.
30. Ford JS, Myers RA (2008) A global assessment of salmon aquaculture impacts on wild salmonids. PLoS Biol 6(2):e33.
31. Krkošek M, Ford JS, Morton A, Lele S, Myers RA, Lewis MA (2007) Declining wild salmon populations in relation to parasites from farm salmon. Science (80--‐ ) 318(5857):1772--‐1775..
32. Ferguson J a., Koketsu W, Ninomiya I, Rossignol PA., Jacobson KC, Kent ML (2011) Mortality of coho salmon (Oncorhynchus kisutch) associated with burdens of multiple parasite species. Int J Parasitol 41:1197–1205.
33. Jacobson KC, Teel D, Van Doornik DM, Casillas E (2008) Parasite--‐associated mortality of juvenile Pacific salmon caused by the trematode Nanophyetus salmincola during early marine residence. Mar Ecol Prog Ser 354:235–244.
34. Losee JP, Miller JA, Peterson WT, Teel DJ, Jacobson KC (2014) Influence of ocean ecosystem variation on trophic interactions and survival of juvenile coho and Chinook salmon. Can J Fish Aquat Sci 71:1747–1757.
35. Marty GD, Saksida SM, Quinn TJ (2010) Relationship of farm salmon, sea lice, and wild salmon populations. Proc Natl Acad Sci 107:22599–22604.
36. Peacock SJ, Connors BM, Krkošek M, Irvine JR, Lewis MA (2014) Can reduced predation offset negative effects of sea louse parasites on chum salmon? Proc Roy Soc B 281:20132913.
37. Krkošek M, Morton A, Volpe JP, Lewis MA, Krkosek M (2009) Sea lice and salmon population dynamics: effects of exposure time for migratory fish. Proc Roy Soc B 276:2819–2828.
38. Connors BM, Krkošek M, Ford J, Dill LM (2010) Coho salmon productivity in relation to salmon lice from infected prey and salmon farms. J Appl Ecol 47:1372–1377.
39. Gargan PG, Tully O, Poole WR (2003) Relationship between sea lice infestation, sea lice production and sea trout survival in Ireland, 1992--‐2001. Salmon at the Edge, ed Mills D (Blackwell Science Publ., Osney Mead, Oxford OX2 0EL, England), pp 119– 135.
40. Bjorn PA, Finstad B, Kristoffersen R (2001) Salmon lice infection of wild sea trout and Arctic char in marine and freshwaters: the effects of salmon farms. Aquac Res 32:947–962.
41. Amos KH, et al. (2014) U.S. response to a report of infectious Salmon Anemia Virus in Western North America. Fisheries 39:501–506.
42. Simon Fraser University (2011) Lethal Atlantic virus found in Pacific salmon.
http://www.sfu.ca/university--‐communications/media--‐releases/2011/lethal--‐ atlantic--‐virus--‐found--‐in--‐pacific--‐salmon.html [accessed 20 Apr 2015].
43. Cohen BI (2012) The Uncertain Future of Fraser River Sockeye. Volume 1: The Sockeye Fishery.
44. COSEWIC (2003) Assessment and Status Report on the Sockeye Salmon Oncorhynchus nerka (Cultus population) in Canada (Ottawa, ON).
45. McKinnell SM, Wood CC, Rutherford DT, Hyatt KD, Welch DW (2001) The demise of Owikeno Lake sockeye salmon. North Am J Fish Manag 21:774–491.
46. Cohen BI (2012) The Uncertain Future of Fraser River Sockeye. Volume 2: Causes of the Decline.
47. Mjaaland S, Hungnes O, Teig A, Dannevig BH, Thorud K, Rimstad E (2002) Polymorphism in the infectious Salmon Anemia Virus hemagglutinin gene : Importance and possible implications for evolution and ecology of Infectious Salmon Anemia disease. Virology 304:379–391.
48. Nylund A, Devold M, Plarre H (2003) Emergence and maintenance of infectious salmon anaemia virus (ISAV) in Europe: a new hypothesis. Dis Aquat Organ 56:11– 24.
49. Dannevig BH, Falk K, Namork E (1995) Isolation of the causal virus of infectious salmon anaemia (ISA) in a long--‐term cell line from Atlantic salmon head kidney. J Gen Virol 76:1353–1359.
50. Asche F, Hansen H, Tveteras R, Tveteras S, Tvereras S (2009) The Salmon disease crisis in Chile. Mar Resour Econ 24:405–411.
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